PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103630.2
Common NameCsa_6G497120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 238aa    MW: 27422.8 Da    PI: 8.1925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103630.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-0961103855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +ErrRR++i++ f  L  l+P +      K +Ka++L  A++++k+Lq
  Cucsa.103630.2  61 AERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIKFVKELQ 103
                     7*********************9.....69*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.98553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1360118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1361121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-961107No hitNo description
PfamPF000101.2E-661103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEISSAKWLS ELEMMECSYE YERMKKYPHD YTLDELNFPA MEKVNNSRSS GQLISFGDYS  60
AERRRREKIR QNFIALSALI PGLIKRDKAS VLGGAIKFVK ELQERLKWAE EKEKEQKRVI  120
KSVVFVKTIN LDSDFDNETF SLDENGGRFS VRSVPTIETR VLEKDVLVRI HCKKHKGCYT  180
SIVSEIEKLK LTIVNSCVFP FGQSRLDITI IAEMEAGFCM TPMDLGKKLR ETLIEFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166ERRRRE
26267RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-133LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-133LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143535.11e-154PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0725e-46BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0A0KLM81e-149A0A0A0KLM8_CUCSA; Uncharacterized protein
STRINGSolyc01g106460.2.13e-54(Solanum lycopersicum)
STRINGPGSC0003DMT4000130742e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-47bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]